Primer Atlas

Reference-panel contract

Full order alignments are the general evidence. Study centroids are named exceptions.

The atlas never silently reuses a convenient reference panel for every primer. Each result identifies the sequences actually scored.

1,000

Initial arthropod baseline

Each listed arthropod order or composite target group begins with at least 1,000 retained, quality-filtered COI sequences when NCBI can supply them. Shortfalls remain explicit.

+1%

Append-only monthly growth

The next target is ceiling(previous retained × 1.01). Only unseen accessions are appended; established panels are not replaced by new random samples.

ALL

Scoring denominator

General primers are evaluated against every retained sequence in the full reference-coordinate alignment. Centroid clustering may support previews, never the production denominator.

Named exception

BeePrime keeps the Gurten et al. author centroids as study-specific evidence.

That panel supports the publication-linked bee drill-down. It does not become a universal reference for Spidprey, NoPlant, ANML, or unrelated primer pairs.

Fungal ITS pilot

UNITE compiles; original publications receive the primer citation.

The pilot exposes every sequence-valid imported primer record, target, limitation, and original reference. UNITE remains compilation provenance. Unpublished or missing references are labelled rather than converted into a generic publication.

Open UNITE primer resource